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  5. GSVIVT01017108001

GSVIVT01017108001


Description : Regulator of telomere elongation helicase 1 homolog OS=Oryza sativa subsp. japonica


Gene families : OG0002453 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002453_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01017108001
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00154010 evm_27.TU.AmTr_v1... Regulator of telomere elongation helicase 1 homolog... 0.02 OrthoFinder output from all 47 species
AT1G20720 No alias RAD3-like DNA-binding helicase protein 0.06 OrthoFinder output from all 47 species
Aspi01Gene31350.t1 Aspi01Gene31350 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.16G032600.1 Ceric.16G032600 dsDNA helicase *(FANCJ) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.20G041000.1 Ceric.20G041000 regulatory helicase *(RTEL) & original description:... 0.09 OrthoFinder output from all 47 species
Cre02.g089608 No alias Regulator of telomere elongation helicase 1 homolog... 0.07 OrthoFinder output from all 47 species
Gb_04351 No alias Regulator of telomere elongation helicase 1 homolog... 0.03 OrthoFinder output from all 47 species
Gb_36663 No alias Regulator of telomere elongation helicase 1 homolog... 0.03 OrthoFinder output from all 47 species
LOC_Os01g40980.1 LOC_Os01g40980 Regulator of telomere elongation helicase 1 homolog... 0.08 OrthoFinder output from all 47 species
LOC_Os09g37920.1 LOC_Os09g37920 Regulator of telomere elongation helicase 1 homolog... 0.03 OrthoFinder output from all 47 species
MA_10436237g0010 No alias Regulator of telomere elongation helicase 1 homolog... 0.08 OrthoFinder output from all 47 species
MA_959247g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp7g07280.1 No alias Regulator of telomere elongation helicase 1 homolog... 0.03 OrthoFinder output from all 47 species
Smo77246 No alias Regulator of telomere elongation helicase 1 homolog... 0.04 OrthoFinder output from all 47 species
Solyc10g079510.3.1 Solyc10g079510 Regulator of telomere elongation helicase 1 homolog... 0.07 OrthoFinder output from all 47 species
Tin_g31760 No alias regulatory helicase *(RTEL) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e034917_P001 Zm00001e034917 Regulator of telomere elongation helicase 1 homolog... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR006555 ATP-dep_Helicase_C 545 739
IPR010614 DEAD_2 78 239
No external refs found!