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  5. GSVIVT01016562001

GSVIVT01016562001 (SCL30, At-SCL30)


Aliases : SCL30, At-SCL30

Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP factors.SCL28/30/33 splicing factor


Gene families : OG0001193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001193_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01016562001

Target Alias Description ECC score Gene Family Method Actions
AT1G55310 SR33, At-SCL33,... SC35-like splicing factor 33 0.03 OrthoFinder output from all 47 species
AT3G55460 SCL30, At-SCL30 SC35-like splicing factor 30 0.04 OrthoFinder output from all 47 species
Adi_g014843 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000402.16 At-SCL30A, SCL30A RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Cre13.g586916 At-SCL28, SCL28 RNA processing.RNA splicing.spliceosome-associated... 0.04 OrthoFinder output from all 47 species
Dcu_g08086 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02200 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15811 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os07g43950.1 At-SCL30A,... SCL28/30/33 RNA splicing factor 0.07 OrthoFinder output from all 47 species
LOC_Os12g38430.1 SCL30, At-SCL30,... SCL28/30/33 RNA splicing factor 0.03 OrthoFinder output from all 47 species
MA_122608g0010 At-SCL28, SCL28 SCL28/30/33 RNA splicing factor 0.04 OrthoFinder output from all 47 species
Mp4g01880.1 At-SCL30A, SCL30A SCL28/30/33 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Solyc01g080660.3.1 At-SCL28, SCL28,... SCL28/30/33 RNA splicing factor 0.09 OrthoFinder output from all 47 species
Spa_g29764 At-SCL30A, SCL30A EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Zm00001e002967_P002 SCL30, At-SCL30,... SCL28/30/33 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Zm00001e020950_P002 SCL30, At-SCL30,... SCL28/30/33 RNA splicing factor 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0004860 protein kinase inhibitor activity IEP HCCA
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019210 kinase inhibitor activity IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 119 188
No external refs found!