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  5. GSVIVT01016236001

GSVIVT01016236001 (APUM4, PUM4)


Aliases : APUM4, PUM4

Description : Pumilio homolog 4 OS=Arabidopsis thaliana


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01016236001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00251030 APUM2, PUM2,... Pumilio homolog 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT3G20250 PUM5, APUM5 pumilio 5 0.03 OrthoFinder output from all 47 species
Adi_g075414 APUM2, PUM2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g081646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18146 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_23280 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_30039 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Gb_30040 APUM6, PUM6 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Gb_39566 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Lfl_g30614 PUM3, APUM3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10159883g0010 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Ppi_g06503 APUM2, PUM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo1983 APUM4, PUM4 Pumilio homolog 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc03g123980.4.1 PUM5, APUM5,... Pumilio homolog 5 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc04g011580.4.1 PUM1, APUM1,... Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
InterPro domains Description Start Stop
IPR012940 NABP 319 690
IPR001313 Pumilio_RNA-bd_rpt 727 758
IPR001313 Pumilio_RNA-bd_rpt 764 795
IPR001313 Pumilio_RNA-bd_rpt 880 903
IPR001313 Pumilio_RNA-bd_rpt 836 869
IPR001313 Pumilio_RNA-bd_rpt 958 984
IPR001313 Pumilio_RNA-bd_rpt 909 941
IPR001313 Pumilio_RNA-bd_rpt 800 832
IPR001313 Pumilio_RNA-bd_rpt 692 724
No external refs found!