1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01016208001

GSVIVT01016208001


Description : Cell wall.pectin.modification and degradation.pectate lyase


Gene families : OG0000492 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000492_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01016208001
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
AMTR_s00120p00111300 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
AT1G14420 AT59 Pectate lyase family protein 0.04 OrthoFinder output from all 47 species
AT1G67750 No alias Pectate lyase family protein 0.04 OrthoFinder output from all 47 species
AT2G02720 No alias Pectate lyase family protein 0.05 OrthoFinder output from all 47 species
AT3G54920 PMR6 Pectin lyase-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G22080 RHS14 root hair specific 14 0.03 OrthoFinder output from all 47 species
AT4G24780 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G09280 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G15110 No alias Pectate lyase family protein 0.05 OrthoFinder output from all 47 species
Aop_g20815 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os05g22800.1 LOC_Os05g22800 pectate lyase 0.04 OrthoFinder output from all 47 species
LOC_Os10g31910.1 LOC_Os10g31910 pectate lyase 0.04 OrthoFinder output from all 47 species
MA_10428603g0020 No alias pectate lyase 0.04 OrthoFinder output from all 47 species
MA_10429028g0020 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
MA_10430145g0020 No alias pectate lyase 0.05 OrthoFinder output from all 47 species
MA_185203g0010 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
Mp8g00770.1 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
Msp_g10750 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g39754 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g014000.4.1 Solyc05g014000 pectate lyase 0.03 OrthoFinder output from all 47 species
Solyc06g083580.4.1 Solyc06g083580 pectate lyase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0050662 obsolete coenzyme binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR002022 Pec_lyase 154 335
No external refs found!