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  5. GSVIVT01015970001

GSVIVT01015970001 (ATCNGC8, CNGC8)


Aliases : ATCNGC8, CNGC8

Description : Solute transport.channels.VIC superfamily.cyclic nucleotide-gated cation channel (CNGC-type)


Gene families : OG0000170 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000170_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01015970001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00155680 ATCNGC20,... Solute transport.channels.VIC superfamily.cyclic... 0.03 OrthoFinder output from all 47 species
AMTR_s00177p00063110 DND1, ATCNGC2,... Solute transport.channels.VIC superfamily.cyclic... 0.04 OrthoFinder output from all 47 species
AMTR_s00210p00019190 CNGC5, ATCNGC5,... Solute transport.channels.VIC superfamily.cyclic... 0.02 OrthoFinder output from all 47 species
AT1G15990 CNGC7, ATCNGC7 cyclic nucleotide gated channel 7 0.02 OrthoFinder output from all 47 species
AT1G19780 ATCNGC8, CNGC8 cyclic nucleotide gated channel 8 0.04 OrthoFinder output from all 47 species
AT3G48010 ATCNGC16, CNGC16 cyclic nucleotide-gated channel 16 0.04 OrthoFinder output from all 47 species
AT5G15410 DND1, ATCNGC2, CNGC2 Cyclic nucleotide-regulated ion channel family protein 0.04 OrthoFinder output from all 47 species
Adi_g115311 CNGC15, ATCNGC15 cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Aev_g07275 ATCNGC9, CNGC9 cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Ala_g05813 ATCNGC20, CNGC20, CNBT1 cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Ala_g13851 ATCNGC14, CNGC14 cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene20301.t1 ATCNGC20,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene46957.t1 CNGC15,... cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Cba_g15401 ATCNGC20, CNGC20, CNBT1 cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Ceric.23G068600.1 CNGC15,... cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Dac_g05216 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g14388 CNGC15, ATCNGC15 cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Dac_g37579 DND1, ATCNGC2, CNGC2 cyclic nucleotide-gated cation channel *(CNGC) &... 0.05 OrthoFinder output from all 47 species
Ehy_g05039 CNGC15, ATCNGC15 cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01028711001 ATCNGC1, CNGC1 Solute transport.channels.VIC superfamily.cyclic... 0.05 OrthoFinder output from all 47 species
GSVIVT01029404001 ATCNGC20, CNGC20, CNBT1 Solute transport.channels.VIC superfamily.cyclic... 0.03 OrthoFinder output from all 47 species
Gb_10882 No alias Probable cyclic nucleotide-gated ion channel 20,... 0.06 OrthoFinder output from all 47 species
LOC_Os12g28260.1 CNGC7, ATCNGC7,... cyclic nucleotide-gated cation channel (CNGC) 0.03 OrthoFinder output from all 47 species
Len_g05232 DND1, ATCNGC2, CNGC2 cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Lfl_g17251 DND1, ATCNGC2, CNGC2 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Mp4g04110.1 CNGC15, ATCNGC15 cyclic nucleotide-gated cation channel (CNGC) 0.02 OrthoFinder output from all 47 species
Msp_g26583 CNGC5, ATCNGC5 cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Nbi_g01306 CNGC7, ATCNGC7 cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Pir_g47554 ATCNGC1, CNGC1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g30209 No alias cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Sam_g39902 No alias cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Smo113786 ATCNGC9, CNGC9 Solute transport.channels.VIC superfamily.cyclic... 0.03 OrthoFinder output from all 47 species
Solyc02g086990.4.1 CNGC18,... cyclic nucleotide-gated cation channel (CNGC) 0.03 OrthoFinder output from all 47 species
Solyc03g114110.4.1 ATCNGC16,... cyclic nucleotide-gated cation channel (CNGC) 0.1 OrthoFinder output from all 47 species
Solyc06g051920.4.1 ATCNGC1, CNGC1,... cyclic nucleotide-gated cation channel (CNGC) 0.05 OrthoFinder output from all 47 species
Spa_g10307 CNGC15, ATCNGC15 cyclic nucleotide-gated cation channel *(CNGC) &... 0.04 OrthoFinder output from all 47 species
Spa_g39810 DND2, CNGC4,... cyclic nucleotide-gated cation channel *(CNGC) &... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEA Interproscan
BP GO:0006811 monoatomic ion transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000595 cNMP-bd_dom 526 615
IPR005821 Ion_trans_dom 107 432
No external refs found!