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  5. GSVIVT01015721001

GSVIVT01015721001


Description : Protein PAT1 homolog 1 OS=Arabidopsis thaliana


Gene families : OG0002686 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002686_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01015721001
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00155p00028780 evm_27.TU.AmTr_v1... Protein PAT1 homolog OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G79090 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.1 OrthoFinder output from all 47 species
AT3G22270 No alias Topoisomerase II-associated protein PAT1 0.05 OrthoFinder output from all 47 species
Ceric.32G051000.1 Ceric.32G051000 mRNA decay factor *(PAT1) & original description:... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021357.9 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre06.g278203 No alias No description available 0.04 OrthoFinder output from all 47 species
Dcu_g04904 No alias mRNA decay factor *(PAT1) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12300 No alias mRNA decay factor *(PAT1) & original description: none 0.03 OrthoFinder output from all 47 species
Mp4g14040.1 No alias mRNA decay factor (PAT1) 0.05 OrthoFinder output from all 47 species
Ore_g19688 No alias mRNA decay factor *(PAT1) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g13550 No alias mRNA decay factor *(PAT1) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g016240.4.1 Solyc05g016240 mRNA decay factor (PAT1) 0.03 OrthoFinder output from all 47 species
Solyc12g006420.2.1 Solyc12g006420 mRNA decay factor (PAT1) 0.03 OrthoFinder output from all 47 species
Solyc12g017260.2.1 Solyc12g017260 mRNA decay factor (PAT1) 0.08 OrthoFinder output from all 47 species
Zm00001e019701_P001 Zm00001e019701 mRNA decay factor (PAT1) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006013 mannose metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006914 autophagy IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA

No InterPro domains available for this sequence

No external refs found!