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  5. GSVIVT01015528001

GSVIVT01015528001


Description : Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.NUP205 scaffold nucleoporin


Gene families : OG0003848 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003848_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01015528001
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00104p00040040 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.06 OrthoFinder output from all 47 species
Adi_g011594 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.04 OrthoFinder output from all 47 species
Aev_g33320 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.04 OrthoFinder output from all 47 species
Als_g05767 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.04 OrthoFinder output from all 47 species
Aob_g23782 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene01846.t1 Aspi01Gene01846 scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.03 OrthoFinder output from all 47 species
Azfi_s0222.g058815 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.05 OrthoFinder output from all 47 species
Ceric.36G007000.1 Ceric.36G007000 scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.1 OrthoFinder output from all 47 species
Cre13.g578100 No alias No description available 0.03 OrthoFinder output from all 47 species
Dac_g01801 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.03 OrthoFinder output from all 47 species
Dcu_g12341 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.05 OrthoFinder output from all 47 species
Dde_g01776 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.05 OrthoFinder output from all 47 species
Ehy_g07967 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.02 OrthoFinder output from all 47 species
Gb_31636 No alias NUP205 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
LOC_Os02g10790.1 LOC_Os02g10790 NUP205 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
LOC_Os02g10794.1 LOC_Os02g10794 Nuclear pore complex protein NUP205 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_23099g0010 No alias Nuclear pore complex protein NUP205 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp6g01090.1 No alias NUP205 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
Ore_g17338 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.03 OrthoFinder output from all 47 species
Sam_g03960 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50570 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.03 OrthoFinder output from all 47 species
Solyc12g006480.2.1 Solyc12g006480 NUP205 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
Tin_g04761 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.04 OrthoFinder output from all 47 species
Zm00001e014006_P001 Zm00001e014006 NUP205 scaffold nucleoporin of nuclear pore complex 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR021827 Nup186/Nup192/Nup205 25 1622
No external refs found!