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  5. GSVIVT01015447001

GSVIVT01015447001


Description : Polyamine metabolism.putrescine.synthesis.cytosolic pathway.ornithine decarboxylase


Gene families : OG0000356 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000356_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01015447001

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01017856001 SAMDC4, BUD2 Polyamine... 0.04 OrthoFinder output from all 47 species
Gb_37304 No alias ornithine decarboxylase 0.04 OrthoFinder output from all 47 species
Gb_37305 No alias ornithine decarboxylase 0.04 OrthoFinder output from all 47 species
Gb_37328 No alias ornithine decarboxylase 0.05 OrthoFinder output from all 47 species
LOC_Os09g37120.1 LOC_Os09g37120 ornithine decarboxylase 0.02 OrthoFinder output from all 47 species
Lfl_g25624 No alias EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
MA_2649g0010 SAMDC S-adenosyl methionine decarboxylase 0.04 OrthoFinder output from all 47 species
Ore_g02769 No alias EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g098310.1.1 Solyc03g098310 ornithine decarboxylase 0.03 OrthoFinder output from all 47 species
Solyc04g082030.1.1 Solyc04g082030 ornithine decarboxylase 0.03 OrthoFinder output from all 47 species
Zm00001e035959_P001 Zm00001e035959 ornithine decarboxylase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
InterPro domains Description Start Stop
IPR022644 De-COase2_N 117 229
IPR022643 De-COase2_C 230 341
No external refs found!