1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01014718001

GSVIVT01014718001 (OLI2)


Aliases : OLI2

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.OLI2 maturation factor


Gene families : OG0004210 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004210_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01014718001
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00211510 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
AT4G26600 No alias S-adenosyl-L-methionine-dependent methyltransferases... 0.13 OrthoFinder output from all 47 species
AT5G55920 OLI2 S-adenosyl-L-methionine-dependent methyltransferases... 0.03 OrthoFinder output from all 47 species
Aev_g02479 No alias rRNA methyltransferase *(NOP2) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g47688 OLI2 rRNA methyltransferase *(NOP2) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.38G044600.1 Ceric.38G044600 rRNA methyltransferase *(NOP2) & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000114.21 OLI2 Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
Cre06.g273413 OLI2 Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 OrthoFinder output from all 47 species
Dac_g20948 No alias rRNA methyltransferase *(NOP2) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g13909 No alias rRNA methyltransferase *(NOP2) & original description: none 0.06 OrthoFinder output from all 47 species
Gb_02482 No alias OLI2 LSU processome maturation factor 0.08 OrthoFinder output from all 47 species
LOC_Os02g49270.1 LOC_Os02g49270 OLI2 LSU processome maturation factor 0.09 OrthoFinder output from all 47 species
LOC_Os09g37860.1 LOC_Os09g37860 OLI2 LSU processome maturation factor 0.13 OrthoFinder output from all 47 species
MA_10427534g0030 No alias OLI2 LSU processome maturation factor 0.03 OrthoFinder output from all 47 species
Mp6g04100.1 No alias OLI2 LSU processome maturation factor 0.15 OrthoFinder output from all 47 species
Ore_g19331 OLI2 rRNA methyltransferase *(NOP2) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0069.g016553 No alias rRNA methyltransferase *(NOP2) & original description: CDS=1-1836 0.03 OrthoFinder output from all 47 species
Sam_g17866 No alias rRNA methyltransferase *(NOP2) & original description: none 0.05 OrthoFinder output from all 47 species
Smo437511 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
Solyc02g079415.1.1 Solyc02g079415 OLI2 LSU processome maturation factor 0.05 OrthoFinder output from all 47 species
Solyc07g052110.4.1 Solyc07g052110 OLI2 LSU processome maturation factor 0.06 OrthoFinder output from all 47 species
Spa_g52054 No alias rRNA methyltransferase *(NOP2) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e015692_P001 Zm00001e015692 OLI2 LSU processome maturation factor 0.09 OrthoFinder output from all 47 species
Zm00001e023394_P001 Zm00001e023394 OLI2 LSU processome maturation factor 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001678 MeTrfase_RsmB/NOP2 1 156
No external refs found!