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  5. GSVIVT01014591001

GSVIVT01014591001


Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor


Gene families : OG0001549 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001549_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01014591001
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AT1G05290 No alias CCT motif family protein 0.03 OrthoFinder output from all 47 species
Aspi01Gene05807.t1 COL9, Aspi01Gene05807 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0032.g024861 COL9 not classified & original description: CDS=1-1125 0.03 OrthoFinder output from all 47 species
Dac_g00827 No alias BBX class-II transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g08497 No alias BBX class-II transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01011820001 COL9 No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01030628001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
Msp_g19193 COL9 BBX class-II transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g24935 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g45459 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15254 No alias BBX class-II transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g045180.4.1 COL9, Solyc07g045180 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA

No InterPro domains available for this sequence

No external refs found!