GSVIVT01014290001

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS20 component

Gene families : OG0006775 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006775_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01014290001
Cluster	HCCA: Cluster_79

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00068p00188920	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.07	OrthoFinder output from all 47 species
AT3G15190	No alias	chloroplast 30S ribosomal protein S20, putative	0.12	OrthoFinder output from all 47 species
Adi_g045230	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Aev_g22835	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ala_g08893	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Als_g08208	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Aob_g06235	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Aop_g03027	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Aspi01Gene37724.t1	Aspi01Gene37724	component *(bS20c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Azfi_s0228.g059056	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Cba_g11240	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ceric.11G009600.1	Ceric.11G009600	component *(bS20c) of small plastid ribosomal-subunit...	0.18	OrthoFinder output from all 47 species
Cre12.g494750	No alias	Protein biosynthesis.organelle translation...	0.13	OrthoFinder output from all 47 species
Dac_g10899	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Dcu_g37258	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Dde_g15842	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ehy_g11872	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Gb_27504	No alias	component psRPS20 of small ribosomal subunit proteome	0.15	OrthoFinder output from all 47 species
LOC_Os01g48690.1	LOC_Os01g48690	component psRPS20 of small ribosomal subunit proteome	0.22	OrthoFinder output from all 47 species
Len_g00203	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Lfl_g00868	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.13	OrthoFinder output from all 47 species
MA_872747g0010	No alias	component psRPS20 of small ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
Mp7g14740.1	No alias	component psRPS20 of small ribosomal subunit proteome	0.2	OrthoFinder output from all 47 species
Nbi_g03416	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Ore_g04849	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Pir_g10569	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Pnu_g10841	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ppi_g26924	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009139	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sam_g20147	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Solyc07g062870.3.1	Solyc07g062870	component psRPS20 of small ribosomal subunit proteome	0.19	OrthoFinder output from all 47 species
Spa_g08226	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Spa_g08227	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Spa_g50703	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.17	OrthoFinder output from all 47 species
Tin_g10912	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Zm00001e028066_P001	Zm00001e028066	component psRPS20 of small ribosomal subunit proteome	0.21	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005509	calcium ion binding	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEP	HCCA
MF	GO:0008171	O-methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0015994	chlorophyll metabolic process	IEP	HCCA
BP	GO:0015995	chlorophyll biosynthetic process	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
MF	GO:0016872	intramolecular lyase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0034311	diol metabolic process	IEP	HCCA
BP	GO:0034312	diol biosynthetic process	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0046146	tetrahydrobiopterin metabolic process	IEP	HCCA
BP	GO:0046148	pigment biosynthetic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
MF	GO:0046406	magnesium protoporphyrin IX methyltransferase activity	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002583	Ribosomal_S20	78	164

External Links

No external refs found!

GSVIVT01014290001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation