1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01014083001

GSVIVT01014083001


Description : Histone-lysine N-methyltransferase TRX1 OS=Oryza sativa subsp. japonica


Gene families : OG0002734 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002734_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01014083001
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AT3G14740 No alias RING/FYVE/PHD zinc finger superfamily protein 0.1 OrthoFinder output from all 47 species
Aop_g14467 No alias not classified & original description: none 0.15 OrthoFinder output from all 47 species
Azfi_s0232.g059315 No alias not classified & original description: CDS=108-2696 0.04 OrthoFinder output from all 47 species
Ceric.08G035800.1 Ceric.08G035800 not classified & original description: pacid=50638697... 0.17 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020710.90 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021348.79 ATX3, SDG14 Histone-lysine N-methyltransferase TRX1 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Dcu_g14797 No alias not classified & original description: none 0.13 OrthoFinder output from all 47 species
Gb_23341 No alias Histone-lysine N-methyltransferase TRX1 OS=Oryza sativa... 0.2 OrthoFinder output from all 47 species
LOC_Os01g08820.1 LOC_Os01g08820 Histone-lysine N-methyltransferase TRX1 OS=Oryza sativa... 0.13 OrthoFinder output from all 47 species
MA_37406g0010 No alias Histone-lysine N-methyltransferase TRX1 OS=Oryza sativa... 0.1 OrthoFinder output from all 47 species
Msp_g14549 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g06978 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14038 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g062100.4.1 Solyc07g062100 Histone-lysine N-methyltransferase TRX1 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Tin_g07715 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Zm00001e016664_P001 Zm00001e016664 Histone-lysine N-methyltransferase TRX1 OS=Oryza sativa... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!