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  5. GSVIVT01014050001

GSVIVT01014050001


Description : Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0005967 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005967_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01014050001

Target Alias Description ECC score Gene Family Method Actions
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
Adi_g016371 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04893 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g10911 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g21865 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g12627 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g39665 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g06462 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g20213 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03993 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_06104 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 OrthoFinder output from all 47 species
Len_g12313 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.04 OrthoFinder output from all 47 species
Msp_g10407 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g13761 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25071 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 662 705
IPR002885 Pentatricopeptide_repeat 210 250
IPR002885 Pentatricopeptide_repeat 345 391
IPR002885 Pentatricopeptide_repeat 766 807
IPR002885 Pentatricopeptide_repeat 832 880
IPR002885 Pentatricopeptide_repeat 279 306
IPR002885 Pentatricopeptide_repeat 730 760
IPR002885 Pentatricopeptide_repeat 558 583
IPR002885 Pentatricopeptide_repeat 488 511
IPR002885 Pentatricopeptide_repeat 174 199
IPR002885 Pentatricopeptide_repeat 591 617
IPR002885 Pentatricopeptide_repeat 524 549
IPR002885 Pentatricopeptide_repeat 315 343
No external refs found!