1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01013978001

GSVIVT01013978001 (MSI1, MEE70, ATMSI1)


Aliases : MSI1, MEE70, ATMSI1

Description : Chromatin organisation.histone modifications.histone lysine methylation/demethylation.PRC2 histone methylation complex.VRN/FIS/EMF core complexes.MSI1 component


Gene families : OG0001615 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001615_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01013978001

Target Alias Description ECC score Gene Family Method Actions
Als_g06181 MSI1, MEE70, ATMSI1 flowering time factor *(FVE) & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000808.15 MSI1, MEE70, ATMSI1 Chromatin organisation.histone chaperone activities.CAF1... 0.01 OrthoFinder output from all 47 species
Gb_27299 MSI1, MEE70, ATMSI1 component CAF1c/MSI of CAF1 histone chaperone complex.... 0.04 OrthoFinder output from all 47 species
LOC_Os03g43890.1 MSI1, MEE70,... component CAF1c/MSI of CAF1 histone chaperone complex.... 0.05 OrthoFinder output from all 47 species
Len_g05275 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.03 OrthoFinder output from all 47 species
MA_4921g0010 MSI1, MEE70, ATMSI1 WD-40 repeat-containing protein MSI1 OS=Solanum... 0.03 OrthoFinder output from all 47 species
MA_70799g0010 MSI1, MEE70, ATMSI1 component CAF1c/MSI of CAF1 histone chaperone complex 0.05 OrthoFinder output from all 47 species
Pir_g11272 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011535 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.02 OrthoFinder output from all 47 species
Sam_g02081 No alias component *(MSI3) of ISWI chromatin remodeling complex &... 0.04 OrthoFinder output from all 47 species
Sam_g28493 No alias component *(MSI1) of PRC2 histone methylation complex &... 0.03 OrthoFinder output from all 47 species
Solyc01g104510.3.1 MSI1, MEE70,... component CAF1c/MSI of CAF1 histone chaperone complex.... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 140 176
IPR001680 WD40_repeat 287 322
IPR001680 WD40_repeat 184 222
No external refs found!