GSVIVT01013839001

Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase

Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01013839001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00027p00247950	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
AT2G36710	No alias	Pectin lyase-like superfamily protein	0.03	OrthoFinder output from all 47 species
Aspi01Gene71978.t1	Aspi01Gene71978	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0033.g024992	No alias	pectin methylesterase & original description: CDS=226-1431	0.03	OrthoFinder output from all 47 species
Ceric.10G069000.1	Ceric.10G069000	pectin methylesterase & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.13G037500.1	Ceric.13G037500	pectin methylesterase & original description:...	0.03	OrthoFinder output from all 47 species
LOC_Os05g44600.1	LOC_Os05g44600	pectin methylesterase	0.02	OrthoFinder output from all 47 species
Msp_g42451	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005602	No alias	pectin methylesterase & original description: CDS=911-2185	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	Interproscan
BP	GO:0042545	cell wall modification	IEA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	73	357

External Links

No external refs found!