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  5. GSVIVT01013770001

GSVIVT01013770001 (CAF2, ATCAF2)


Aliases : CAF2, ATCAF2

Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.CRS2-CAF splicing factor complexes.CAF component


Gene families : OG0001061 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001061_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01013770001
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
Gb_32774 CAF2, ATCAF2 CRS2-associated factor 2, chloroplastic OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc11g066300.3.1 CAF2, ATCAF2,... component CAF of CRS2-CAF plastidial RNA splicing factor... 0.03 OrthoFinder output from all 47 species
Spa_g06701 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 196 279
IPR001890 RNA-binding_CRM 314 397
No external refs found!