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  5. GSVIVT01013555001

GSVIVT01013555001 (ATX1, SDG27)


Aliases : ATX1, SDG27

Description : Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis thaliana


Gene families : OG0004303 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004303_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01013555001
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00115800 SDG30, ATX2,... Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder output from all 47 species
Aev_g04886 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Aev_g32400 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Cre03.g197700 SDG30, ATX2 Histone-lysine N-methyltransferase TRX1 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Dcu_g05840 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Dde_g51047 SDG30, ATX2 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
LOC_Os09g04890.1 SDG30, ATX2,... Histone-lysine N-methyltransferase TRX1 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Msp_g13971 SDG30, ATX2 class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
Solyc09g098260.3.1 SDG30, ATX2,... Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e033644_P001 SDG30, ATX2,... class III/Trithorax histone methyltransferase component... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR003889 FYrich_C 506 581
IPR001214 SET_dom 915 1021
IPR000313 PWWP_dom 299 365
IPR003888 FYrich_N 447 497
No external refs found!