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  5. GSVIVT01013390001

GSVIVT01013390001


Description : Putative pentatricopeptide repeat-containing protein At5g43820 OS=Arabidopsis thaliana


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01013390001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00119p00084460 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27800,... 0.02 OrthoFinder output from all 47 species
Aev_g04119 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g26096 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g39755 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.22G081200.1 Ceric.22G081200 not classified & original description: pacid=50614086... 0.02 OrthoFinder output from all 47 species
Dcu_g06272 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_185802g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.05 OrthoFinder output from all 47 species
Sam_g19969 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Solyc01g097730.4.1 Solyc01g097730 Pentatricopeptide repeat-containing protein At3g60050... 0.06 OrthoFinder output from all 47 species
Solyc03g112560.4.1 Solyc03g112560 Pentatricopeptide repeat-containing protein At1g80550,... 0.02 OrthoFinder output from all 47 species
Zm00001e013118_P001 Zm00001e013118 Pentatricopeptide repeat-containing protein At3g61360... 0.03 OrthoFinder output from all 47 species
Zm00001e021940_P001 Zm00001e021940 Pentatricopeptide repeat-containing protein At5g18390,... 0.03 OrthoFinder output from all 47 species
Zm00001e036305_P001 Zm00001e036305 Pentatricopeptide repeat-containing protein At3g25210,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 252 308
IPR002885 Pentatricopeptide_repeat 443 470
IPR002885 Pentatricopeptide_repeat 406 434
IPR002885 Pentatricopeptide_repeat 336 364
IPR002885 Pentatricopeptide_repeat 123 171
No external refs found!