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  5. GSVIVT01013389001

GSVIVT01013389001


Description : Regulator of telomere elongation helicase 1 homolog OS=Arabidopsis thaliana


Gene families : OG0002453 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002453_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01013389001
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AT1G20720 No alias RAD3-like DNA-binding helicase protein 0.2 OrthoFinder output from all 47 species
Als_g10918 No alias regulatory helicase *(RTEL) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0083.g038884 No alias dsDNA helicase *(FANCJ) & original description: CDS=38-3979 0.03 OrthoFinder output from all 47 species
Cba_g26656 No alias regulatory helicase *(RTEL) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.16G032600.1 Ceric.16G032600 dsDNA helicase *(FANCJ) & original description:... 0.19 OrthoFinder output from all 47 species
Ceric.20G041000.1 Ceric.20G041000 regulatory helicase *(RTEL) & original description:... 0.03 OrthoFinder output from all 47 species
Cre02.g089608 No alias Regulator of telomere elongation helicase 1 homolog... 0.04 OrthoFinder output from all 47 species
Cre09.g397350 No alias Regulator of telomere elongation helicase 1 homolog... 0.02 OrthoFinder output from all 47 species
Gb_36663 No alias Regulator of telomere elongation helicase 1 homolog... 0.19 OrthoFinder output from all 47 species
Gb_36664 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os09g37920.1 LOC_Os09g37920 Regulator of telomere elongation helicase 1 homolog... 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002634 No alias subunit c of V-type ATPase membrane V0 subcomplex &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0045.g013303 No alias not classified & original description: CDS=8-1192 0.04 OrthoFinder output from all 47 species
Smo408754 No alias Regulator of telomere elongation helicase 1 homolog... 0.06 OrthoFinder output from all 47 species
Solyc03g120200.2.1 Solyc03g120200 Regulator of telomere elongation helicase 1 homolog... 0.03 OrthoFinder output from all 47 species
Solyc10g079510.3.1 Solyc10g079510 Regulator of telomere elongation helicase 1 homolog... 0.22 OrthoFinder output from all 47 species
Zm00001e034917_P001 Zm00001e034917 Regulator of telomere elongation helicase 1 homolog... 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP HCCA
MF GO:0001882 nucleoside binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006555 ATP-dep_Helicase_C 585 737
IPR010614 DEAD_2 140 287
No external refs found!