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  5. GSVIVT01013362001

GSVIVT01013362001


Description : Pentatricopeptide repeat-containing protein At5g42310, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0007882 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007882_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01013362001
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Adi_g016489 No alias mRNA stability factor *(CRP1) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22401 No alias mRNA stability factor *(CRP1) & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.1Z098800.1 Ceric.1Z098800 mRNA stability factor *(CRP1) & original description:... 0.03 OrthoFinder output from all 47 species
Gb_11328 No alias plastidial mRNA processing factor (CRP1) 0.06 OrthoFinder output from all 47 species
Len_g13834 No alias mRNA stability factor *(CRP1) & original description: none 0.04 OrthoFinder output from all 47 species
Mp5g09810.1 No alias plastidial mRNA processing factor (CRP1) 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0053.g014172 No alias not classified & original description: CDS=1-2166 0.03 OrthoFinder output from all 47 species
Sam_g29683 No alias mRNA stability factor *(CRP1) & original description: none 0.03 OrthoFinder output from all 47 species
Smo135281 No alias Pentatricopeptide repeat-containing protein At5g42310,... 0.04 OrthoFinder output from all 47 species
Solyc08g045850.3.1 Solyc08g045850 plastidial mRNA processing factor (CRP1) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 523 583
IPR002885 Pentatricopeptide_repeat 383 443
IPR002885 Pentatricopeptide_repeat 295 321
IPR002885 Pentatricopeptide_repeat 604 652
IPR002885 Pentatricopeptide_repeat 326 373
IPR002885 Pentatricopeptide_repeat 186 230
IPR002885 Pentatricopeptide_repeat 464 511
No external refs found!