GSVIVT01013222001 (RAB6A, ATRABH1B, ATRAB6A, RAB6)

Aliases : RAB6A, ATRABH1B, ATRAB6A, RAB6

Description : Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase activities.H-class RAB GTPase

Gene families : OG0001773 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001773_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01013222001

Target	Alias	Description	ECC score	Gene Family Method
AT2G44610	RAB6A, ATRABH1B,...	Ras-related small GTP-binding family protein	0.05	OrthoFinder output from all 47 species
AT4G39890	AtRABH1c, RABH1c	RAB GTPase homolog H1C	0.03	OrthoFinder output from all 47 species
Ala_g06784	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g07680	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.05	OrthoFinder output from all 47 species
Aob_g33368	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g07607	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g07608	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.05	OrthoFinder output from all 47 species
Azfi_s0081.g038634	AtRABH1e, RABH1e	H-class RAB GTPase & original description: CDS=162-800	0.03	OrthoFinder output from all 47 species
Cba_g24911	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.01G018400.1	AtRABH1e,...	H-class RAB GTPase & original description:...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021464.53	AtRABH1e, RABH1e	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
Cre01.g047550	RAB6A, ATRABH1B,...	Vesicle trafficking.regulation of membrane tethering and...	0.03	OrthoFinder output from all 47 species
Dcu_g07473	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g35885	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g09589	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
LOC_Os07g31370.1	RAB6A, ATRABH1B,...	H-class RAB GTPase	0.04	OrthoFinder output from all 47 species
Mp5g03960.1	AtRABH1e, RABH1e	H-class RAB GTPase	0.04	OrthoFinder output from all 47 species
Msp_g17260	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g21059	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g12814	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Smo145680	AtRABH1e, RABH1e	Vesicle trafficking.regulation of membrane tethering and...	0.04	OrthoFinder output from all 47 species
Solyc05g051570.3.1	AtRABH1e,...	H-class RAB GTPase	0.04	OrthoFinder output from all 47 species
Spa_g05988	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g15125	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g05830	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e000684_P002	AtRABH1e,...	H-class RAB GTPase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	2	140

External Links

No external refs found!

GSVIVT01013222001 (RAB6A, ATRABH1B, ATRAB6A, RAB6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation