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  5. GSVIVT01012909001

GSVIVT01012909001


Description : UV-B-induced protein At3g17800, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000927 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000927_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01012909001
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00021530 evm_27.TU.AmTr_v1... UV-B-induced protein At3g17800, chloroplastic... 0.03 OrthoFinder output from all 47 species
AT3G17800 No alias Protein of unknown function (DUF760) 0.04 OrthoFinder output from all 47 species
Adi_g082878 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g09381 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01714 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g10807 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0048.g030627 No alias not classified & original description: CDS=5-1237 0.04 OrthoFinder output from all 47 species
Cba_g32030 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g23603 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g44043 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g01381 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20230 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g50870.1 LOC_Os03g50870 UV-B-induced protein At3g17800, chloroplastic... 0.09 OrthoFinder output from all 47 species
LOC_Os04g50860.1 LOC_Os04g50860 UV-B-induced protein At3g17800, chloroplastic... 0.05 OrthoFinder output from all 47 species
Len_g23389 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g28395 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10435028g0010 No alias UV-B-induced protein At3g17800, chloroplastic... 0.03 OrthoFinder output from all 47 species
Ore_g05706 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g31290 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g19753 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo82738 No alias UV-B-induced protein At3g17800, chloroplastic... 0.02 OrthoFinder output from all 47 species
Solyc03g098000.3.1 Solyc03g098000 UV-B-induced protein At3g17800, chloroplastic... 0.07 OrthoFinder output from all 47 species
Spa_g28943 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012160_P002 Zm00001e012160 UV-B-induced protein At3g17800, chloroplastic... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0009916 alternative oxidase activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
InterPro domains Description Start Stop
IPR008479 DUF760 139 265
No external refs found!