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  5. GSVIVT01012705001

GSVIVT01012705001


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UPT6 assembly factor


Gene families : OG0004540 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004540_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01012705001
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AT4G28200 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.1 OrthoFinder output from all 47 species
Aop_g08502 No alias SSU processome assembly factor *(UTP6) & original... 0.04 OrthoFinder output from all 47 species
Azfi_s2889.g113567 No alias SSU processome assembly factor *(UTP6) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000571.29 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 OrthoFinder output from all 47 species
Cre10.g442000 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 OrthoFinder output from all 47 species
Ehy_g03852 No alias SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os02g01350.1 LOC_Os02g01350 SSU processome assembly factor (UTP6) 0.07 OrthoFinder output from all 47 species
MA_10435952g0010 No alias SSU processome assembly factor (UTP6) 0.06 OrthoFinder output from all 47 species
Mp7g18520.1 No alias SSU processome assembly factor (UTP6) 0.1 OrthoFinder output from all 47 species
Pir_g09702 No alias SSU processome assembly factor *(UTP6) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009974 No alias chloroplast import factor *(PRAT1) & original... 0.04 OrthoFinder output from all 47 species
Sam_g29993 No alias SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
Tin_g02822 No alias SSU processome assembly factor *(UTP6) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e011580_P001 Zm00001e011580 SSU processome assembly factor (UTP6) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA Interproscan
MF GO:0030515 snoRNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013949 Utp6 9 95
No external refs found!