GSVIVT01012651001

Description : RNA pseudouridine synthase 6, chloroplastic OS=Arabidopsis thaliana

Gene families : OG0004900 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004900_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01012651001
Cluster	HCCA: Cluster_51

Target	Alias	Description	ECC score	Gene Family Method
AT4G21770	No alias	Pseudouridine synthase family protein	0.07	OrthoFinder output from all 47 species
Aob_g04323	No alias	plastidial RNA pseudouridine synthase *(PUS6) & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0084.g038918	No alias	plastidial RNA pseudouridine synthase *(PUS6) & original...	0.04	OrthoFinder output from all 47 species
Dde_g06490	No alias	plastidial RNA pseudouridine synthase *(PUS6) & original...	0.03	OrthoFinder output from all 47 species
LOC_Os07g46600.1	LOC_Os07g46600	RNA pseudouridine synthase 6, chloroplastic OS=Oryza...	0.05	OrthoFinder output from all 47 species
Lfl_g15644	No alias	plastidial RNA pseudouridine synthase *(PUS6) & original...	0.03	OrthoFinder output from all 47 species
Ppi_g43571	No alias	plastidial RNA pseudouridine synthase *(PUS6) & original...	0.02	OrthoFinder output from all 47 species
Sam_g37002	No alias	plastidial RNA pseudouridine synthase *(PUS6) & original...	0.03	OrthoFinder output from all 47 species
Zm00001e010909_P002	Zm00001e010909	RNA pseudouridine synthase 6, chloroplastic OS=Oryza...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006145	PsdUridine_synth_RsuA/RluA	221	389

External Links

No external refs found!