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  5. GSVIVT01012161001

GSVIVT01012161001 (PTAC14)


Aliases : PTAC14

Description : RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP7/TAC14 component


Gene families : OG0004603 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004603_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01012161001

Target Alias Description ECC score Gene Family Method Actions
AT4G20130 PTAC14 plastid transcriptionally active 14 0.15 OrthoFinder output from all 47 species
Aev_g31785 PTAC14 cofactor of plastid-encoded RNA polymerase *(PAP7/TAC14)... 0.04 OrthoFinder output from all 47 species
Aspi01Gene25659.t1 PTAC14, Aspi01Gene25659 cofactor of plastid-encoded RNA polymerase *(PAP7/TAC14)... 0.03 OrthoFinder output from all 47 species
Azfi_s0027.g023488 PTAC14 cofactor of plastid-encoded RNA polymerase *(PAP7/TAC14)... 0.03 OrthoFinder output from all 47 species
LOC_Os05g50980.1 PTAC14, LOC_Os05g50980 PAP7/TAC14 cofactor of plastid-encoded RNA polymerase 0.14 OrthoFinder output from all 47 species
Mp7g10810.1 PTAC14 PAP7/TAC14 cofactor of plastid-encoded RNA polymerase 0.07 OrthoFinder output from all 47 species
Pir_g18909 PTAC14 cofactor of plastid-encoded RNA polymerase *(PAP7/TAC14)... 0.03 OrthoFinder output from all 47 species
Pnu_g09247 PTAC14 cofactor of plastid-encoded RNA polymerase *(PAP7/TAC14)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0176.g024616 PTAC14 cofactor of plastid-encoded RNA polymerase *(PAP7/TAC14)... 0.03 OrthoFinder output from all 47 species
Smo126991 PTAC14 RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
Solyc02g081920.3.1 PTAC14, Solyc02g081920 PAP7/TAC14 cofactor of plastid-encoded RNA polymerase 0.09 OrthoFinder output from all 47 species
Zm00001e026650_P001 PTAC14, Zm00001e026650 PAP7/TAC14 cofactor of plastid-encoded RNA polymerase 0.16 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR015353 Rubisco_LSMT_subst-bd 411 463
IPR001214 SET_dom 99 322
No external refs found!