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  5. GSVIVT01011767001

GSVIVT01011767001


Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.U-Box E3 ligase activities.PUB-type


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01011767001

Target Alias Description ECC score Gene Family Method Actions
AT1G71020 No alias ARM repeat superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G07360 PUB9, ATPUB9 plant U-box 9 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000215.127 No alias No description available 0.01 OrthoFinder output from all 47 species
LOC_Os04g28100.1 PUB9, ATPUB9,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
MA_9478009g0010 PUB15 E3 ubiquitin ligase (PUB) 0.04 OrthoFinder output from all 47 species
Ore_g17320 PUB13, ATPUB13 E3 ubiquitin ligase *(PUB15) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 454 492
IPR000225 Armadillo 372 410
IPR003613 Ubox_domain 242 313
No external refs found!