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  5. GSVIVT01011125001

GSVIVT01011125001 (UVH6, ATXPD)


Aliases : UVH6, ATXPD

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIIh basal transcription factor complex.XPD-type subunit


Gene families : OG0004711 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004711_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01011125001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00038580 UVH6, ATXPD,... RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
Aev_g29567 UVH6, ATXPD component *(XPD) of TFIIh basal transcription factor... 0.03 OrthoFinder output from all 47 species
Cba_g27812 UVH6, ATXPD component *(XPD) of TFIIh basal transcription factor... 0.02 OrthoFinder output from all 47 species
Ceric.34G044700.1 UVH6, ATXPD,... component *(XPD) of TFIIh basal transcription factor... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.101 UVH6, ATXPD RNA biosynthesis.RNA polymerase II-dependent... 0.04 OrthoFinder output from all 47 species
Cre17.g706300 UVH6, ATXPD RNA biosynthesis.RNA polymerase II-dependent... 0.01 OrthoFinder output from all 47 species
Dde_g23080 UVH6, ATXPD component *(XPD) of TFIIh basal transcription factor... 0.04 OrthoFinder output from all 47 species
Len_g03875 UVH6, ATXPD component *(XPD) of TFIIh basal transcription factor... 0.02 OrthoFinder output from all 47 species
Lfl_g39949 UVH6, ATXPD component *(XPD) of TFIIh basal transcription factor... 0.05 OrthoFinder output from all 47 species
Solyc06g008970.4.1 UVH6, ATXPD,... subunit XPD of multifunctional TFIIh complex. component... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
BP GO:0006528 asparagine metabolic process IEP HCCA
BP GO:0006529 asparagine biosynthetic process IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006555 ATP-dep_Helicase_C 688 861
IPR010614 DEAD_2 72 122
IPR010614 DEAD_2 127 229
IPR010643 HBB 438 576
No external refs found!