Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).U1C snRNP component
Gene families : OG0002867 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002867_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: GSVIVT01011011001 | |
Cluster | HCCA: Cluster_70 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Azfi_s0094.g043500 | No alias | component *(U1C) of U1 snRNP complex & original... | 0.03 | OrthoFinder output from all 47 species | |
Cre09.g401300 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.02 | OrthoFinder output from all 47 species | |
Gb_41077 | No alias | component U1C of U1 small nuclear ribonucleoprotein... | 0.03 | OrthoFinder output from all 47 species | |
Mp4g05150.1 | No alias | component U1C of U1 small nuclear ribonucleoprotein... | 0.02 | OrthoFinder output from all 47 species | |
Solyc06g008860.3.1 | Solyc06g008860 | component U1C of U1 small nuclear ribonucleoprotein... | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000786 | nucleosome | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
CC | GO:0005667 | transcription regulator complex | IEP | HCCA |
BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
CC | GO:0016592 | mediator complex | IEP | HCCA |
CC | GO:0017053 | transcription repressor complex | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
CC | GO:0032993 | protein-DNA complex | IEP | HCCA |
CC | GO:0044815 | DNA packaging complex | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR013085 | U1-CZ_Znf_C2H2 | 1 | 38 |
No external refs found! |