GSVIVT01011011001


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).U1C snRNP component


Gene families : OG0002867 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002867_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01011011001
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0094.g043500 No alias component *(U1C) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Cre09.g401300 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Gb_41077 No alias component U1C of U1 small nuclear ribonucleoprotein... 0.03 OrthoFinder output from all 47 species
Mp4g05150.1 No alias component U1C of U1 small nuclear ribonucleoprotein... 0.02 OrthoFinder output from all 47 species
Solyc06g008860.3.1 Solyc06g008860 component U1C of U1 small nuclear ribonucleoprotein... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0017053 transcription repressor complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR013085 U1-CZ_Znf_C2H2 1 38
No external refs found!