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  5. GSVIVT01010180001

GSVIVT01010180001 (CCB3, atylmg3, YLMG3)


Aliases : CCB3, atylmg3, YLMG3

Description : Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCB cytochrome b6 maturation system (system IV).CCB3 component


Gene families : OG0006561 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006561_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01010180001
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AT5G36120 CCB3, atylmg3, YLMG3 cofactor assembly, complex C (B6F) 0.07 OrthoFinder output from all 47 species
Als_g00510 CCB3, atylmg3, YLMG3 assembly factor CCB3 of CCB cytochrome b6 maturation... 0.05 OrthoFinder output from all 47 species
Aspi01Gene59538.t1 CCB3, atylmg3,... assembly factor CCB3 of CCB cytochrome b6 maturation... 0.03 OrthoFinder output from all 47 species
Cba_g04968 CCB3, atylmg3, YLMG3 assembly factor CCB3 of CCB cytochrome b6 maturation... 0.03 OrthoFinder output from all 47 species
Ceric.13G022000.1 CCB3, atylmg3,... assembly factor CCB3 of CCB cytochrome b6 maturation... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020912.28 CCB3, atylmg3, YLMG3 Photosynthesis.photophosphorylation.cytochrome b6/f... 0.04 OrthoFinder output from all 47 species
Cre01.g052400 No alias Photosynthesis.photophosphorylation.cytochrome b6/f... 0.03 OrthoFinder output from all 47 species
Dcu_g02417 CCB3, atylmg3, YLMG3 assembly factor CCB3 of CCB cytochrome b6 maturation... 0.07 OrthoFinder output from all 47 species
Gb_04602 CCB3, atylmg3, YLMG3 assembly factor CCB3 of CCB cytochrome b6 maturation... 0.05 OrthoFinder output from all 47 species
LOC_Os01g73540.1 CCB3, atylmg3,... assembly factor CCB3 of CCB cytochrome b6 maturation... 0.11 OrthoFinder output from all 47 species
Len_g10269 CCB3, atylmg3, YLMG3 assembly factor CCB3 of CCB cytochrome b6 maturation... 0.03 OrthoFinder output from all 47 species
Msp_g29461 CCB3, atylmg3, YLMG3 assembly factor CCB3 of CCB cytochrome b6 maturation... 0.09 OrthoFinder output from all 47 species
Nbi_g04659 CCB3, atylmg3, YLMG3 assembly factor CCB3 of CCB cytochrome b6 maturation... 0.07 OrthoFinder output from all 47 species
Pir_g12781 CCB3, atylmg3, YLMG3 assembly factor CCB3 of CCB cytochrome b6 maturation... 0.04 OrthoFinder output from all 47 species
Pp3c10_19880V3.1 CCB3, atylmg3,... cofactor assembly, complex C (B6F) 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0096.g019313 CCB3, atylmg3, YLMG3 assembly factor CCB3 of CCB cytochrome b6 maturation... 0.03 OrthoFinder output from all 47 species
Solyc02g021000.3.1 CCB3, atylmg3,... assembly factor CCB3 of CCB cytochrome b6 maturation... 0.05 OrthoFinder output from all 47 species
Zm00001e028271_P001 CCB3, atylmg3,... assembly factor CCB3 of CCB cytochrome b6 maturation... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR003425 CCB3/YggT 124 193
No external refs found!