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  5. GSVIVT01010022001

GSVIVT01010022001 (GTA02, GTA2)


Aliases : GTA02, GTA2

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.SPT4/5 transcription elongation factor complex.SPT5 component


Gene families : OG0002736 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002736_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01010022001
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AT4G08350 GTA02, GTA2 global transcription factor group A2 0.03 OrthoFinder output from all 47 species
Adi_g020093 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.04 OrthoFinder output from all 47 species
Adi_g122061 GTA02, GTA2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g125396 GTA02, GTA2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g13254 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.03 OrthoFinder output from all 47 species
Ala_g11309 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.05 OrthoFinder output from all 47 species
Als_g05130 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.02 OrthoFinder output from all 47 species
Aob_g14168 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.02 OrthoFinder output from all 47 species
Aop_g07106 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.04 OrthoFinder output from all 47 species
Ceric.26G072300.1 GTA02, GTA2,... component *(SPT5) of SPT4/5 transcription elongation... 0.05 OrthoFinder output from all 47 species
Dcu_g08962 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.05 OrthoFinder output from all 47 species
Ehy_g18831 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.03 OrthoFinder output from all 47 species
Gb_37075 GTA02, GTA2 RNA polymerase-V auxiliary factor (KTF1/SPT5L).... 0.03 OrthoFinder output from all 47 species
LOC_Os05g43060.1 SPT5L, KTF1,... RNA polymerase-V auxiliary factor (KTF1/SPT5L) 0.03 OrthoFinder output from all 47 species
LOC_Os06g10620.1 GTA02, GTA2,... component SPT5 of SPT4/5 transcription elongation factor complex 0.04 OrthoFinder output from all 47 species
Len_g12137 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.06 OrthoFinder output from all 47 species
Lfl_g05703 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.03 OrthoFinder output from all 47 species
MA_10434986g0010 GTA02, GTA2 RNA polymerase-V auxiliary factor (KTF1/SPT5L).... 0.06 OrthoFinder output from all 47 species
Msp_g23875 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.02 OrthoFinder output from all 47 species
Ore_g19192 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.04 OrthoFinder output from all 47 species
Ppi_g52300 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000804 GTA02, GTA2 not classified & original description: CDS=1-249 0.03 OrthoFinder output from all 47 species
Smo449156 GTA02, GTA2 RNA biosynthesis.RNA polymerase II-dependent... 0.04 OrthoFinder output from all 47 species
Smo96727 GTA02, GTA2 RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
Solyc04g064700.4.1 GTA02, GTA2,... component SPT5 of SPT4/5 transcription elongation factor complex 0.08 OrthoFinder output from all 47 species
Solyc11g008150.3.1 SPT5L, KTF1,... RNA polymerase-V auxiliary factor (KTF1/SPT5L) 0.05 OrthoFinder output from all 47 species
Spa_g04271 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.03 OrthoFinder output from all 47 species
Tin_g41245 GTA02, GTA2 component *(SF3B2) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Zm00001e027389_P004 SPT5L, KTF1,... RNA polymerase-V auxiliary factor (KTF1/SPT5L) 0.04 OrthoFinder output from all 47 species
Zm00001e030789_P001 GTA02, GTA2,... component SPT5 of SPT4/5 transcription elongation factor complex 0.03 OrthoFinder output from all 47 species
Zm00001e032078_P001 SPT5L, KTF1,... RNA polymerase-V auxiliary factor (KTF1/SPT5L) 0.03 OrthoFinder output from all 47 species
Zm00001e036210_P001 GTA02, GTA2,... component SPT5 of SPT4/5 transcription elongation factor complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR022581 Spt5_N 83 170
IPR005100 NGN-domain 176 257
IPR005824 KOW 703 733
IPR005824 KOW 472 513
No external refs found!