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  5. GSVIVT01009918001

GSVIVT01009918001 (PUB8, B80)


Aliases : PUB8, B80

Description : External stimuli response.biotic stress.symbiont-associated response.symbiosis signalling pathway.CERBERUS/LIN ubiquitin E3 ligase


Gene families : OG0002525 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002525_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009918001
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00198080 evm_27.TU.AmTr_v1... External stimuli response.biotic... 0.04 OrthoFinder output from all 47 species
AMTR_s00045p00231470 evm_27.TU.AmTr_v1... Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus 0.03 OrthoFinder output from all 47 species
AMTR_s00109p00103350 evm_27.TU.AmTr_v1... External stimuli response.biotic... 0.04 OrthoFinder output from all 47 species
Aev_g19831 PUB26 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g35478 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g12930.1 LOC_Os01g12930 ubiquitin E3 ligase (CERBERUS/LIN) 0.03 OrthoFinder output from all 47 species
MA_15009g0010 PUB26 Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus... 0.05 OrthoFinder output from all 47 species
Mp2g17510.1 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.02 OrthoFinder output from all 47 species
Ore_g32668 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g41495 No alias ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g066740.3.1 Solyc01g066740 Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 535 604
IPR001680 WD40_repeat 1233 1254
IPR001680 WD40_repeat 1262 1297
No external refs found!