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  5. GSVIVT01009879001

GSVIVT01009879001 (XRN3, AtXRN3)


Aliases : XRN3, AtXRN3

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.exoribonuclease (RAT1/XRN2)


Gene families : OG0000769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000769_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009879001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00024460 XRN3, AtXRN3,... 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00491p00000370 XRN3, AtXRN3,... 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G54490 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease 4 0.05 OrthoFinder output from all 47 species
AT1G75660 XRN3, AtXRN3 5'-3' exoribonuclease 3 0.03 OrthoFinder output from all 47 species
AT5G42540 XRN2, AtXRN2 exoribonuclease 2 0.04 OrthoFinder output from all 47 species
Aev_g17886 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g15103 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11344 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene15159.t1 XRN3, AtXRN3,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0149.g053258 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: CDS=205-3336 0.03 OrthoFinder output from all 47 species
Azfi_s0236.g059553 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: CDS=1782-4652 0.03 OrthoFinder output from all 47 species
Ceric.08G059400.1 EIN5, AIN1,... exoribonuclease *(XRN4) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.30G049400.1 XRN3, AtXRN3,... exoribonuclease *(RAT1/XRN2) & original description:... 0.03 OrthoFinder output from all 47 species
Cre16.g679900 XRN3, AtXRN3 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dde_g04944 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05069 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g06196 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g58060.1 EIN5, AIN1,... EBF-modulating exoribonuclease (EIN5/XRN4).... 0.03 OrthoFinder output from all 47 species
Len_g50910 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06753 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g19229 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g34614 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10430844g0010 XRN3, AtXRN3 exoribonuclease (RAT1/XRN2) 0.05 OrthoFinder output from all 47 species
MA_17503g0010 XRN3, AtXRN3 5-3 exoribonuclease 3 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Msp_g13176 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13698 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19704 EIN5, AIN1, XRN4, ATXRN4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g01687 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012142 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: CDS=244-3387 0.02 OrthoFinder output from all 47 species
Sam_g12064 No alias exoribonuclease *(RAT1/XRN2) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g38845 No alias exoribonuclease *(XRN4) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc04g081280.3.1 XRN3, AtXRN3,... exoribonuclease (RAT1/XRN2) 0.04 OrthoFinder output from all 47 species
Solyc12g089280.2.1 XRN3, AtXRN3,... exoribonuclease (RAT1/XRN2) 0.05 OrthoFinder output from all 47 species
Tin_g46210 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e011879_P001 EIN5, AIN1,... EBF-modulating exoribonuclease (EIN5/XRN4).... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
InterPro domains Description Start Stop
IPR004859 Xrn1_N 1 253
IPR001878 Znf_CCHC 263 277
No external refs found!