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  5. GSVIVT01009823001

GSVIVT01009823001


Description : Cold shock protein 1 OS=Arabidopsis thaliana


Gene families : OG0002687 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002687_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009823001

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene35472.t1 Aspi01Gene35472 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.28G054200.1 Ceric.28G054200 not classified & original description: pacid=50571012... 0.03 OrthoFinder output from all 47 species
LOC_Os03g60600.1 LOC_Os03g60600 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc10g054330.3.1 Solyc10g054330 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003883 CTP synthase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004725 protein tyrosine phosphatase activity IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006470 protein dephosphorylation IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 133 149
IPR001878 Znf_CCHC 107 122
IPR001878 Znf_CCHC 50 66
IPR001878 Znf_CCHC 152 167
IPR001878 Znf_CCHC 207 221
IPR001878 Znf_CCHC 227 243
IPR001878 Znf_CCHC 171 187
IPR001878 Znf_CCHC 70 84
IPR001878 Znf_CCHC 89 104
No external refs found!