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  5. GSVIVT01009573001

GSVIVT01009573001 (emb1427)


Aliases : emb1427

Description : Cytoskeleton.microtubular network.microtubule Tubulin heterodimer formation.gamma-Tubulin ring complex (gamma-TuRC).GCP5 component


Gene families : OG0005639 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005639_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009573001
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AT1G80260 emb1427 Spc97 / Spc98 family of spindle pole body (SBP) component 0.06 OrthoFinder output from all 47 species
Aev_g13781 emb1427 component *(GCP5) of gamma-Tubulin ring complex &... 0.02 OrthoFinder output from all 47 species
Ala_g21435 emb1427 component *(GCP5) of gamma-Tubulin ring complex &... 0.04 OrthoFinder output from all 47 species
Als_g04471 emb1427 component *(GCP5) of gamma-Tubulin ring complex &... 0.05 OrthoFinder output from all 47 species
Aspi01Gene12257.t1 emb1427, Aspi01Gene12257 component *(GCP5) of gamma-Tubulin ring complex &... 0.03 OrthoFinder output from all 47 species
Cre10.g430900 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os12g41290.1 emb1427, LOC_Os12g41290 component GCP5 of gamma-Tubulin ring complex (gamma-TuRC) 0.07 OrthoFinder output from all 47 species
Mp2g08990.1 emb1427 component GCP5 of gamma-Tubulin ring complex (gamma-TuRC) 0.02 OrthoFinder output from all 47 species
Ore_g42943 emb1427 component *(GCP5) of gamma-Tubulin ring complex &... 0.03 OrthoFinder output from all 47 species
Solyc04g079390.3.1 emb1427, Solyc04g079390 component GCP5 of gamma-Tubulin ring complex (gamma-TuRC) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0043015 gamma-tubulin binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR040457 GCP_C 507 822
No external refs found!