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  5. GSVIVT01009393001

GSVIVT01009393001 (AGL104)


Aliases : AGL104

Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009393001
Cluster HCCA: Cluster_361

Target Alias Description ECC score Gene Family Method Actions
Als_g07001 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g13176 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Als_g36973 AGL3, SEP4 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Als_g51470 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g33356 AGL16 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g68054 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene09663.t1 Aspi01Gene09663 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene19451.t1 SOC1, AGL20,... MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene49761.t1 AGL15, Aspi01Gene49761 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene49765.t1 Aspi01Gene49765 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene59880.t1 AGL65, Aspi01Gene59880 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene72145.t2 AGL30, Aspi01Gene72145 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0684.g082058 AGL21 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g33793 AGL14 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g37029 AGL16 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.04G082300.1 AGL28, Ceric.04G082300 MADS/AGL-type transcription factor & original... 0.01 OrthoFinder output from all 47 species
Ceric.12G051700.1 Ceric.12G051700 not classified & original description: pacid=50600703... 0.01 OrthoFinder output from all 47 species
Dac_g20590 AGL30 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g04433 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11287 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12724 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g13201 AGL16 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g14605 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g15498 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g19342 AGL8, FUL MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g19686 AGL16 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g47737 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g49223 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g18067 AGL21 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g21427 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g29512 AGL16 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01008139001 AGL2, SEP1 RNA biosynthesis.transcriptional activation.MADS box... 0.01 OrthoFinder output from all 47 species
GSVIVT01008806001 PI RNA biosynthesis.transcriptional activation.MADS box... 0.01 OrthoFinder output from all 47 species
Len_g06858 AGL16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g09143 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g22236 GL19, AGL19 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g41503 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g08300 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g23025 AGL21 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_16629g0010 ANR1, AGL44 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_5917g0010 AGL9, SEP3 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_6544g0010 STK, AGL11 Floral homeotic protein AGAMOUS OS=Panax ginseng... 0.03 OrthoFinder output from all 47 species
Msp_g08479 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g11525 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g38153 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g43916 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g12231 AGL13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g39679 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g46922 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g60105 AGL18 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g08650 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13248 No alias MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13249 No alias MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15626 No alias MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g18792 No alias MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g36311 No alias MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Solyc04g078300.3.1 AGL104, Solyc04g078300 transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
Spa_g29118 AGL21 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g28519 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e016964_P001 GL19, AGL19,... transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
Zm00001e021053_P001 AGL30, Zm00001e021053 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e036127_P002 AGL66, Zm00001e036127 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 55
No external refs found!