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  5. GSVIVT01008838001

GSVIVT01008838001


Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase


Gene families : OG0000935 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000935_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01008838001
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Aev_g07024 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ceric.08G073800.1 Ceric.08G073800 not classified & original description: pacid=50638342... 0.01 OrthoFinder output from all 47 species
Dde_g08756 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Gb_32928 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Gb_33701 BB2, BB E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os06g03580.2 LOC_Os06g03580 E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_8767494g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Zm00001e024685_P001 Zm00001e024685 E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e029867_P003 BB2, BB, Zm00001e029867 E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 139 180
No external refs found!