GSVIVT01008641001

Description : Protein translocation.endoplasmic reticulum.co-translational insertion system.SRP (signal recognition particle) complex.SRP68 component

Gene families : OG0004017 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004017_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01008641001
Cluster	HCCA: Cluster_66

Target	Alias	Description	ECC score	Gene Family Method
AT5G61970	No alias	signal recognition particle-related / SRP-related	0.04	OrthoFinder output from all 47 species
Ala_g38537	No alias	component *(SRP68) of SRP (signal recognition particle)...	0.02	OrthoFinder output from all 47 species
Ceric.38G038400.1	Ceric.38G038400	component *(SRP68) of SRP (signal recognition particle)...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020554.161	No alias	Protein translocation.endoplasmic...	0.03	OrthoFinder output from all 47 species
Dcu_g28790	No alias	component *(SRP68) of SRP (signal recognition particle)...	0.07	OrthoFinder output from all 47 species
LOC_Os08g23360.1	LOC_Os08g23360	component SRP68 of SRP (signal recognition particle) complex	0.07	OrthoFinder output from all 47 species
Lfl_g12535	No alias	component *(SRP68) of SRP (signal recognition particle)...	0.03	OrthoFinder output from all 47 species
Lfl_g35796	No alias	component *(SRP68) of SRP (signal recognition particle)...	0.03	OrthoFinder output from all 47 species
Mp1g14730.1	No alias	component SRP68 of SRP (signal recognition particle) complex	0.02	OrthoFinder output from all 47 species
Solyc02g062810.4.1	Solyc02g062810	component SRP68 of SRP (signal recognition particle) complex	0.03	OrthoFinder output from all 47 species
Zm00001e035532_P001	Zm00001e035532	component SRP68 of SRP (signal recognition particle) complex	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005047	signal recognition particle binding	IEA	Interproscan
MF	GO:0005048	signal sequence binding	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005786	signal recognition particle, endoplasmic reticulum targeting	IEA	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	None	Extended
BP	GO:0006613	cotranslational protein targeting to membrane	None	Extended
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008312	7S RNA binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
MF	GO:0030942	endoplasmic reticulum signal peptide binding	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
MF	GO:0033218	amide binding	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
MF	GO:0042277	peptide binding	None	Extended
MF	GO:0043021	ribonucleoprotein complex binding	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0045047	protein targeting to ER	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
CC	GO:0048500	signal recognition particle	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0070972	protein localization to endoplasmic reticulum	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003684	damaged DNA binding	IEP	HCCA
MF	GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006289	nucleotide-excision repair	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0043015	gamma-tubulin binding	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR026258	SRP68	43	573

External Links

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GSVIVT01008641001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation