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  5. GSVIVT01008506001

GSVIVT01008506001 (NOP56)


Aliases : NOP56

Description : RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Nop56 snoRNP scaffold component


Gene families : OG0004657 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004657_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01008506001
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00226680 NOP56,... RNA processing.RNA modification.rRNA/tRNA... 0.08 OrthoFinder output from all 47 species
AT1G56110 NOP56 homolog of nucleolar protein NOP56 0.24 OrthoFinder output from all 47 species
AT3G12860 No alias NOP56-like pre RNA processing ribonucleoprotein 0.07 OrthoFinder output from all 47 species
Adi_g050304 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Als_g07194 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12050 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Aop_g11428 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.06 OrthoFinder output from all 47 species
Aspi01Gene34301.t1 NOP56, Aspi01Gene34301 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Cba_g57048 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Cba_g77651 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001073.20 NOP56 RNA processing.RNA modification.rRNA/tRNA... 0.07 OrthoFinder output from all 47 species
Cre12.g525200 NOP56 RNA processing.RNA modification.rRNA/tRNA... 0.08 OrthoFinder output from all 47 species
Dac_g14259 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Ehy_g06884 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Gb_05243 NOP56 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.12 OrthoFinder output from all 47 species
LOC_Os03g22880.1 NOP56, LOC_Os03g22880 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.12 OrthoFinder output from all 47 species
Len_g11157 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.02 OrthoFinder output from all 47 species
Lfl_g03084 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
MA_10434077g0010 NOP56 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.07 OrthoFinder output from all 47 species
MA_9961528g0010 NOP56 Probable nucleolar protein 5-1 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Mp2g23840.1 NOP56 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.1 OrthoFinder output from all 47 species
Msp_g11664 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Nbi_g26532 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Ore_g37588 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.05 OrthoFinder output from all 47 species
Pp3c16_5220V3.1 NOP56, Pp3c16_5220 homolog of nucleolar protein NOP56 0.04 OrthoFinder output from all 47 species
Sam_g10672 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.08 OrthoFinder output from all 47 species
Smo167367 NOP56 RNA processing.RNA modification.rRNA/tRNA... 0.1 OrthoFinder output from all 47 species
Solyc01g100570.4.1 NOP56, Solyc01g100570 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.11 OrthoFinder output from all 47 species
Spa_g48006 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.06 OrthoFinder output from all 47 species
Zm00001e001676_P001 NOP56, Zm00001e001676 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.06 OrthoFinder output from all 47 species
Zm00001e038196_P002 NOP56, Zm00001e038196 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR012974 NOP58/56_N 4 69
IPR002687 Nop_dom 177 409
No external refs found!