GSVIVT01008444001


Description : Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0001673 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001673_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01008444001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00170p00058310 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT1G48570 No alias zinc finger (Ran-binding) family protein 0.04 OrthoFinder output from all 47 species
AT1G53460 No alias BEST Arabidopsis thaliana protein match is: Ran BP2/NZF... 0.01 OrthoFinder output from all 47 species
AT1G55040 No alias zinc finger (Ran-binding) family protein 0.01 OrthoFinder output from all 47 species
Adi_g003867 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g007155 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g054823 No alias RNA editing factor *(OZ) & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g065042 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g108029 No alias RNA editing factor *(OZ) & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g111342 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20942 No alias RNA editing factor *(OZ) & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g11397 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g19541 No alias RNA editing factor *(OZ) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g19944 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30111 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g15963 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12366 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene60534.t1 Aspi01Gene60534 RNA editing factor *(OZ) & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0014.g013544 No alias RNA editing factor *(OZ) & original description: CDS=1-2409 0.02 OrthoFinder output from all 47 species
Azfi_s0198.g057411 No alias RNA editing factor *(OZ) & original description: CDS=1-3054 0.02 OrthoFinder output from all 47 species
Azfi_s0661.g081440 No alias RNA editing factor *(OZ) & original description: CDS=90-3326 0.03 OrthoFinder output from all 47 species
Cba_g14180 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g25497 No alias RNA editing factor *(OZ) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.03G001300.1 Ceric.03G001300 RNA editing factor *(OZ) & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.26G046600.1 Ceric.26G046600 RNA editing factor *(OZ) & original description:... 0.01 OrthoFinder output from all 47 species
Dcu_g11704 No alias RNA editing factor *(OZ) & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g16799 No alias RNA editing factor *(OZ) & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g31737 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g36546 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g11382 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04668 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18300 No alias RNA editing factor *(OZ) & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g18431 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18840 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01000088001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Gb_05351 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Gb_13912 No alias RNA editing factor (OZ-type) 0.03 OrthoFinder output from all 47 species
LOC_Os01g10630.1 LOC_Os01g10630 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
LOC_Os03g50120.1 LOC_Os03g50120 RNA editing factor (OZ-type) 0.02 OrthoFinder output from all 47 species
LOC_Os03g50430.1 LOC_Os03g50430 RNA editing factor (OZ-type) 0.02 OrthoFinder output from all 47 species
LOC_Os07g22024.1 LOC_Os07g22024 RNA editing factor (OZ-type) 0.01 OrthoFinder output from all 47 species
Len_g48399 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06216 No alias RNA editing factor *(OZ) & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g18415 No alias RNA editing factor *(OZ) & original description: none 0.01 OrthoFinder output from all 47 species
MA_10434973g0010 No alias RNA editing factor (OZ-type) 0.03 OrthoFinder output from all 47 species
MA_10436123g0010 No alias RNA editing factor (OZ-type) 0.02 OrthoFinder output from all 47 species
MA_7499122g0010 No alias RNA editing factor (OZ-type) 0.07 OrthoFinder output from all 47 species
MA_854125g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g09059 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15706 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03681 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g04568 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g15553 No alias RNA editing factor *(OZ) & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g00990 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g55843 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002698 No alias calcium sensor *(CML) & original description: CDS=2182-4251 0.01 OrthoFinder output from all 47 species
Sam_g06378 No alias RNA editing factor *(OZ) & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g07101 No alias RNA editing factor *(OZ) & original description: none 0.01 OrthoFinder output from all 47 species
Smo438605 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc01g099230.3.1 Solyc01g099230 RNA editing factor (OZ-type) 0.03 OrthoFinder output from all 47 species
Solyc03g118680.3.1 Solyc03g118680 RNA editing factor (OZ-type) 0.02 OrthoFinder output from all 47 species
Solyc10g007440.3.1 Solyc10g007440 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g11918 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g20697 No alias RNA ediTing factor *(OZ) & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 291 319
IPR001876 Znf_RanBP2 330 358
IPR001876 Znf_RanBP2 252 275
IPR001876 Znf_RanBP2 365 386
No external refs found!