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  5. GSVIVT01008352001

GSVIVT01008352001 (PAPS1)


Aliases : PAPS1

Description : RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase


Gene families : OG0000731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000731_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01008352001
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AT4G32850 PAP(IV), nPAP nuclear poly(a) polymerase 0.04 OrthoFinder output from all 47 species
Adi_g055927 PAPS1 poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g18756 PAPS1 poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06963 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.06 OrthoFinder output from all 47 species
Als_g33647 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.09 OrthoFinder output from all 47 species
Aspi01Gene01167.t1 PAP(IV), nPAP,... poly(A) RNA polymerase & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g12374 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.22G023600.1 PAP(IV), nPAP,... poly(A) RNA polymerase & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000037.23 PAPS1 RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.01 OrthoFinder output from all 47 species
Cre10.g433750 PAPS1 RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species
LOC_Os02g13400.2 PAP(IV), nPAP,... poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species
LOC_Os06g21470.1 PAPS1, LOC_Os06g21470 poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species
Lfl_g10052 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.05 OrthoFinder output from all 47 species
MA_136671g0010 PAP(IV), nPAP poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species
Mp7g10140.1 PAPS1 poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species
Ore_g44222 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g08262 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56291 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc08g066200.3.1 PAP(IV), nPAP,... poly(A) RNA polymerase 0.04 OrthoFinder output from all 47 species
Solyc12g095890.2.1 PAP(IV), nPAP,... poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species
Zm00001e005199_P002 PAPS1, Zm00001e005199 poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species
Zm00001e012328_P001 PAPS1, Zm00001e012328 poly(A) RNA polymerase 0.04 OrthoFinder output from all 47 species
Zm00001e024922_P001 PAP(IV), nPAP,... poly(A) RNA polymerase 0.07 OrthoFinder output from all 47 species
Zm00001e030659_P006 PAP(IV), nPAP,... poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0043631 RNA polyadenylation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006520 amino acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002934 Polymerase_NTP_transf_dom 82 166
IPR007012 PolA_pol_cen_dom 17 360
IPR007010 PolA_pol_RNA-bd_dom 364 422
No external refs found!