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  5. GSVIVT01008301001

GSVIVT01008301001


Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-E component


Gene families : OG0007427 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007427_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01008301001
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
AT2G18740 No alias Small nuclear ribonucleoprotein family protein 0.12 OrthoFinder output from all 47 species
AT4G30330 No alias Small nuclear ribonucleoprotein family protein 0.1 OrthoFinder output from all 47 species
Adi_g022466 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Ala_g15675 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Aspi01Gene28255.t1 Aspi01Gene28255 component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species
Azfi_s0067.g036221 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species
Ceric.12G097200.1 Ceric.12G097200 component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species
Cre08.g385200 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.08 OrthoFinder output from all 47 species
LOC_Os02g03440.1 LOC_Os02g03440 component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.05 OrthoFinder output from all 47 species
LOC_Os08g05530.1 LOC_Os08g05530 component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.09 OrthoFinder output from all 47 species
Lfl_g32234 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.05 OrthoFinder output from all 47 species
MA_118124g0010 No alias component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.07 OrthoFinder output from all 47 species
MA_63270g0010 No alias component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
MA_7209g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp5g07450.1 No alias component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Ore_g15975 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Pir_g13139 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.05 OrthoFinder output from all 47 species
Pp3c14_15210V3.1 Pp3c14_15210 Small nuclear ribonucleoprotein family protein 0.01 OrthoFinder output from all 47 species
Smo230895 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.05 OrthoFinder output from all 47 species
Solyc06g072280.3.1 Solyc06g072280 component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 20 83
No external refs found!