GSVIVT01008257001

Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.cPTH splicing factor

Gene families : OG0001693 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001693_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01008257001
Cluster	HCCA: Cluster_44

Target	Alias	Description	ECC score	Gene Family Method
Dde_g41554	No alias	plastidial RNA splicing factor *(cPTH)) & original...	0.02	OrthoFinder output from all 47 species
LOC_Os01g04130.1	LOC_Os01g04130	Chloroplastic group IIB intron splicing facilitator...	0.01	OrthoFinder output from all 47 species
LOC_Os01g49900.1	LOC_Os01g49900	cPTH plastidial RNA splicing factor	0.04	OrthoFinder output from all 47 species
Len_g09494	No alias	plastidial RNA splicing factor *(cPTH)) & original...	0.04	OrthoFinder output from all 47 species
Pnu_g16591	No alias	plastidial RNA splicing factor *(cPTH)) & original...	0.02	OrthoFinder output from all 47 species
Solyc02g086150.4.1	Solyc02g086150	component CRS2 of CRS2-CAF plastidial RNA splicing...	0.07	OrthoFinder output from all 47 species
Tin_g14945	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004045	aminoacyl-tRNA hydrolase activity	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001328	Pept_tRNA_hydro	114	292

External Links

No external refs found!