GSVIVT01008158001 (CYL2, ATDPB2, DPB2)

Aliases : CYL2, ATDPB2, DPB2

Description : Cell cycle.interphase.DNA replication.elongation.DNA polymerase epsilon complex.Dpb2 non-catalytic component

Gene families : OG0007445 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007445_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01008158001
Cluster	HCCA: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00151000	CYL2, ATDPB2,...	Cell cycle.interphase.DNA replication.elongation.DNA...	0.09	OrthoFinder output from all 47 species
AT5G22110	CYL2, ATDPB2, DPB2	DNA polymerase epsilon subunit B2	0.04	OrthoFinder output from all 47 species
Als_g31667	CYL2, ATDPB2, DPB2	non-catalytic component *(Dpb2) of DNA polymerase...	0.06	OrthoFinder output from all 47 species
Aop_g06660	CYL2, ATDPB2, DPB2	non-catalytic component *(Dpb2) of DNA polymerase...	0.19	OrthoFinder output from all 47 species
Aspi01Gene71983.t1	CYL2, ATDPB2,...	non-catalytic component *(Dpb2) of DNA polymerase...	0.07	OrthoFinder output from all 47 species
Azfi_s0116.g046374	CYL2, ATDPB2, DPB2	non-catalytic component *(Dpb2) of DNA polymerase...	0.11	OrthoFinder output from all 47 species
Ceric.33G019600.1	CYL2, ATDPB2,...	non-catalytic component *(Dpb2) of DNA polymerase...	0.18	OrthoFinder output from all 47 species
Cre10.g424200	CYL2, ATDPB2, DPB2	Cell cycle.interphase.DNA replication.elongation.DNA...	0.1	OrthoFinder output from all 47 species
Dcu_g13380	CYL2, ATDPB2, DPB2	non-catalytic component *(Dpb2) of DNA polymerase...	0.16	OrthoFinder output from all 47 species
LOC_Os05g06840.1	CYL2, ATDPB2,...	non-catalytic component Dpb2 of DNA polymerase epsilon complex	0.13	OrthoFinder output from all 47 species
Len_g59791	CYL2, ATDPB2, DPB2	non-catalytic component *(Dpb2) of DNA polymerase...	0.15	OrthoFinder output from all 47 species
MA_34905g0010	CYL2, ATDPB2, DPB2	non-catalytic component Dpb2 of DNA polymerase epsilon complex	0.03	OrthoFinder output from all 47 species
Mp7g11060.1	CYL2, ATDPB2, DPB2	non-catalytic component Dpb2 of DNA polymerase epsilon complex	0.04	OrthoFinder output from all 47 species
Msp_g38493	CYL2, ATDPB2, DPB2	non-catalytic component *(Dpb2) of DNA polymerase...	0.09	OrthoFinder output from all 47 species
Nbi_g34848	CYL2, ATDPB2, DPB2	non-catalytic component *(Dpb2) of DNA polymerase...	0.03	OrthoFinder output from all 47 species
Ppi_g11131	CYL2, ATDPB2, DPB2	non-catalytic component *(Dpb2) of DNA polymerase...	0.06	OrthoFinder output from all 47 species
Sam_g37738	No alias	non-catalytic component *(Dpb2) of DNA polymerase...	0.04	OrthoFinder output from all 47 species
Solyc03g098250.4.1	CYL2, ATDPB2,...	non-catalytic component Dpb2 of DNA polymerase epsilon complex	0.02	OrthoFinder output from all 47 species
Spa_g12762	CYL2, ATDPB2, DPB2	non-catalytic component *(Dpb2) of DNA polymerase...	0.07	OrthoFinder output from all 47 species
Zm00001e003768_P001	CYL2, ATDPB2,...	non-catalytic component Dpb2 of DNA polymerase epsilon complex	0.12	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003887	DNA-directed DNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0034061	DNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
CC	GO:0000808	origin recognition complex	IEP	HCCA
MF	GO:0003896	DNA primase activity	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0007059	chromosome segregation	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0051301	cell division	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR024639	DNA_pol_e_bsu_N	4	68
IPR007185	DNA_pol_a/d/e_bsu	285	490

External Links

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GSVIVT01008158001 (CYL2, ATDPB2, DPB2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation