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  5. GSVIVT01007998001

GSVIVT01007998001


Description : RNA biosynthesis.transcriptional activation.NIN-like superfamily.RKD transcription factor


Gene families : OG0000385 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000385_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01007998001

Target Alias Description ECC score Gene Family Method Actions
AT4G35590 No alias RWP-RK domain-containing protein 0.02 OrthoFinder output from all 47 species
Adi_g104252 No alias germ cell differentiation factor *(RKD) & original... 0.02 OrthoFinder output from all 47 species
Aev_g25054 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g25427 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Als_g22718 No alias RKD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g61208 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Aob_g18529 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Aspi01Gene18030.t1 Aspi01Gene18030 RKD-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0173.g055806 No alias germ cell differentiation factor *(RKD) & original... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000344.12 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000441.19 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001304.5 No alias No description available 0.03 OrthoFinder output from all 47 species
Dde_g05904 No alias germ cell differentiation factor *(RKD) & original... 0.05 OrthoFinder output from all 47 species
Lfl_g15746 No alias RKD-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g24611 No alias germ cell differentiation factor *(RKD) & original... 0.03 OrthoFinder output from all 47 species
Ore_g29160 No alias germ cell differentiation factor *(RKD) & original... 0.11 OrthoFinder output from all 47 species
Pir_g66117 No alias germ cell differentiation factor *(RKD) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g06440 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Pp3c23_19070V3.1 Pp3c23_19070 No annotation 0.01 OrthoFinder output from all 47 species
Ppi_g06439 No alias germ cell differentiation factor *(RKD) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g09350 No alias germ cell differentiation factor *(RKD) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g55434 No alias germ cell differentiation factor *(RKD) & original... 0.04 OrthoFinder output from all 47 species
Sam_g33063 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003035 RWP-RK_dom 86 133
IPR002885 Pentatricopeptide_repeat 303 353
IPR002885 Pentatricopeptide_repeat 277 300
IPR032867 DYW_dom 372 487
No external refs found!