GSVIVT01007992001 (CDF1)

Aliases : CDF1

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.DOF transcription factor

Gene families : OG0000067 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01007992001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00248860	TMO6,...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
AMTR_s00080p00087770	TMO6,...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
AMTR_s00119p00099150	CDF2,...	RNA biosynthesis.transcriptional activation.C2C2...	0.04	OrthoFinder output from all 47 species
AMTR_s00160p00046100	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	OrthoFinder output from all 47 species
AT1G26790	No alias	Dof-type zinc finger DNA-binding family protein	0.05	OrthoFinder output from all 47 species
AT2G34140	No alias	Dof-type zinc finger DNA-binding family protein	0.03	OrthoFinder output from all 47 species
AT3G21270	ADOF2, DOF2	DOF zinc finger protein 2	0.03	OrthoFinder output from all 47 species
AT4G00940	No alias	Dof-type zinc finger DNA-binding family protein	0.03	OrthoFinder output from all 47 species
AT5G60850	OBP4	OBF binding protein 4	0.05	OrthoFinder output from all 47 species
AT5G62430	CDF1	cycling DOF factor 1	0.06	OrthoFinder output from all 47 species
AT5G66940	No alias	Dof-type zinc finger DNA-binding family protein	0.03	OrthoFinder output from all 47 species
Adi_g084666	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g106349	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g113667	OBP4	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g04622	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g04769	OBP4	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g03761	TMO6	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g01888	CDF3	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g11020	CDF2	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g20563	ADOF1, DOF1	transcription factor *(DOF) & original description: none	0.06	OrthoFinder output from all 47 species
Als_g39186	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g14669	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g18797	OBP3	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g67430	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene29615.t1	CDF3, Aspi01Gene29615	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene47016.t1	CDF2, Aspi01Gene47016	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0004.g008799	ADOF1, DOF1	transcription factor *(DOF) & original description: CDS=1-1614	0.04	OrthoFinder output from all 47 species
Azfi_s0008.g011464	No alias	not classified & original description: CDS=1-2679	0.04	OrthoFinder output from all 47 species
Azfi_s0166.g054389	TMO6	transcription factor *(DOF) & original description: CDS=1-1341	0.03	OrthoFinder output from all 47 species
Azfi_s1074.g096912	TMO6	transcription factor *(DOF) & original description: CDS=1-1176	0.04	OrthoFinder output from all 47 species
Azfi_s4159.g118156	TMO6	transcription factor *(DOF) & original description: CDS=1-876	0.03	OrthoFinder output from all 47 species
Cba_g06470	CDF2	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.12G042700.1	TMO6, Ceric.12G042700	transcription factor *(DOF) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.22G023400.1	OBP3, Ceric.22G023400	transcription factor *(DOF) & original description:...	0.03	OrthoFinder output from all 47 species
Cre12.g521150	CDF2	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
Dac_g45363	CDF2	TIFY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g19391	CDF2	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g01245	CDF1	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g02493	OBP4	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g07718	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g12722	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g26839	CDF1	transcription factor *(DOF) & original description: none	0.05	OrthoFinder output from all 47 species
Gb_20144	HCA2, DOF5.6	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Gb_20867	CDF3	Cyclic dof factor 3 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
Gb_28499	TMO6	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
LOC_Os01g15900.1	CDF2, LOC_Os01g15900	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
LOC_Os02g15350.1	LOC_Os02g15350	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
LOC_Os02g47810.1	HCA2, DOF5.6,...	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
LOC_Os03g07360.1	CDF3, LOC_Os03g07360	transcription factor (DOF)	0.05	OrthoFinder output from all 47 species
LOC_Os03g16850.1	OBP3, LOC_Os03g16850	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
LOC_Os03g38870.1	LOC_Os03g38870	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
LOC_Os03g60630.1	LOC_Os03g60630	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
LOC_Os04g47990.1	LOC_Os04g47990	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
LOC_Os04g58190.1	LOC_Os04g58190	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
LOC_Os07g13260.1	OBP3, LOC_Os07g13260	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
LOC_Os07g32510.1	TMO6, LOC_Os07g32510	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Len_g15221	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g04824	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g06630	OBP3	transcription factor *(DOF) & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g16402	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g26281	OBP4	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
MA_16692g0010	TMO6	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Mp2g20790.1	TMO6	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Msp_g45088	TMO6	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g01077	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g25217	OBP4	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g32243	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g41458	OBP4	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g01905	DOF2.4, ATDOF2.4	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g16291	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g28297	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g44422	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g48794	CDF3	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g52876	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g19752	OBP4	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g06804	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g16493	CDF3	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008715	TMO6	transcription factor *(DOF) & original description: CDS=1-1413	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0156.g023637	CDF3	transcription factor *(DOF) & original description: CDS=1-1434	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0279.g027089	ADOF1, DOF1	transcription factor *(DOF) & original description: CDS=1-1056	0.03	OrthoFinder output from all 47 species
Sam_g36281	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc05g007880.4.1	CDF1, Solyc05g007880	Cyclic dof factor 2 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Spa_g05594	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g41104	CDF3	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g08597	OBP3	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g23610	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e000526_P001	CDF3, Zm00001e000526	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Zm00001e001988_P001	TMO6, Zm00001e001988	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Zm00001e003414_P001	OBP1, Zm00001e003414	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Zm00001e006190_P001	Zm00001e006190	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Zm00001e007228_P002	Zm00001e007228	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Zm00001e010454_P001	TMO6, Zm00001e010454	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Zm00001e011750_P002	Zm00001e011750	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Zm00001e012824_P001	CDF1, Zm00001e012824	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Zm00001e023218_P004	Zm00001e023218	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Zm00001e041944_P001	Zm00001e041944	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	119	175

External Links

No external refs found!

GSVIVT01007992001 (CDF1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation