1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01007916001

GSVIVT01007916001


Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.SMARCAL1-like group.SMARCAL1 chromatin remodeling factor


Gene families : OG0002390 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002390_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01007916001
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AT5G07810 No alias SNF2 domain-containing protein / helicase... 0.05 OrthoFinder output from all 47 species
Adi_g021948 CHA18, CHR18 chromatin remodeling factor *(SMARCAL1) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene37399.t1 Aspi01Gene37399 chromatin remodeling factor *(SMARCAL1) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene37402.t1 Aspi01Gene37402 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001368.11 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre03.g199350 CHA18, CHR18 Chromatin organisation.chromatin remodeling... 0.06 OrthoFinder output from all 47 species
Cre12.g494200 No alias No description available 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010111 No alias chromatin remodeling factor *(SMARCAL1) & original... 0.04 OrthoFinder output from all 47 species
Solyc12g098860.2.1 CHA18, CHR18,... chromatin remodeling factor (SMARCAL1) 0.11 OrthoFinder output from all 47 species
Zm00001e035658_P002 CHA18, CHR18,... chromatin remodeling factor (SMARCAL1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004519 endonuclease activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0001882 nucleoside binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000330 SNF2_N 223 456
IPR001650 Helicase_C 539 634
IPR002711 HNH 1069 1103
No external refs found!