GSVIVT01007883001 (VIP4)

Aliases : VIP4

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.PAF1C transcription initiation and elongation complex.VIP4/LEO1 component

Gene families : OG0004350 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004350_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01007883001

Target	Alias	Description	ECC score	Gene Family Method
AT5G61150	VIP4	leo1-like family protein	0.06	OrthoFinder output from all 47 species
Dcu_g06383	VIP4	component *(VIP4/LEO1) of PAF1C transcription initiation...	0.03	OrthoFinder output from all 47 species
LOC_Os07g01880.1	VIP4, LOC_Os07g01880	component VIP4/LEO1 of PAF1C transcription initiation...	0.03	OrthoFinder output from all 47 species
Msp_g20291	VIP4	component *(VIP4/LEO1) of PAF1C transcription initiation...	0.03	OrthoFinder output from all 47 species
Sam_g19588	No alias	component *(VIP4/LEO1) of PAF1C transcription initiation...	0.02	OrthoFinder output from all 47 species
Zm00001e011566_P001	VIP4, Zm00001e011566	component VIP4/LEO1 of PAF1C transcription initiation...	0.03	OrthoFinder output from all 47 species
Zm00001e032701_P001	VIP4, Zm00001e032701	component VIP4/LEO1 of PAF1C transcription initiation...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006354	DNA-templated transcription elongation	None	Extended
BP	GO:0006368	transcription elongation by RNA polymerase II	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
CC	GO:0008023	transcription elongation factor complex	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016570	histone modification	IEA	Interproscan
CC	GO:0016593	Cdc73/Paf1 complex	IEA	Interproscan
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007149	Leo1	260	419

External Links

No external refs found!

GSVIVT01007883001 (VIP4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation