GSVIVT01007792001 (SMD1, RDR2)

Aliases : SMD1, RDR2

Description : RNA biosynthesis.siRNA biogenesis.RDR2 ssRNA polymerase

Gene families : OG0001039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001039_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01007792001

Target	Alias	Description	ECC score	Gene Family Method
AT1G14790	ATRDRP1, RDR1	RNA-dependent RNA polymerase 1	0.04	OrthoFinder output from all 47 species
AT3G49500	SDE1, RDR6, SGS2	RNA-dependent RNA polymerase 6	0.03	OrthoFinder output from all 47 species
Adi_g074691	SDE1, RDR6, SGS2	ssRNA polymerase *(RDR6) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g114067	ATRDRP1, RDR1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ala_g33594	SDE1, RDR6, SGS2	ssRNA polymerase *(RDR6) & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g33595	SDE1, RDR6, SGS2	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g11966	SDE1, RDR6, SGS2	ssRNA polymerase *(RDR6) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene17564.t1	SDE1, RDR6,...	ssRNA polymerase *(RDR6) & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os04g39160.1	SMD1, RDR2,...	ssRNA polymerase (RDR2)	0.04	OrthoFinder output from all 47 species
Len_g14350	SDE1, RDR6, SGS2	ssRNA polymerase *(RDR6) & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g28892	SMD1, RDR2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g16856	ATRDRP1, RDR1	not classified & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003968	RNA-dependent RNA polymerase activity	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007855	RNA-dep_RNA_pol_euk-typ	378	955

External Links

No external refs found!