GSVIVT01007665001

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).DDX5 pre-mRNA splicing regulator

Gene families : OG0000636 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000636_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01007665001

Target	Alias	Description	ECC score	Gene Family Method
Adi_g020036	ATDRH1, DRH1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g036389	ATDRH1, DRH1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g074120	ATDRH1, DRH1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g32867	No alias	regulatory RNA helicase *(RH20/RH30) of virus...	0.03	OrthoFinder output from all 47 species
Als_g33054	ATDRH1, DRH1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01017651001	No alias	DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
Gb_31459	No alias	pre-mRNA splicing regulator (DDX5)	0.03	OrthoFinder output from all 47 species
Len_g51090	No alias	regulatory RNA helicase *(RH20/RH30) of virus...	0.03	OrthoFinder output from all 47 species
Nbi_g38769	ATDRH1, DRH1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g01558	ATDRH1, DRH1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e027719_P003	ATDRH1, DRH1,...	DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	526	605
IPR011545	DEAD/DEAH_box_helicase_dom	320	491

External Links

No external refs found!

GSVIVT01007665001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation