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  5. GSVIVT01006249001

GSVIVT01006249001


Description : 40S ribosomal protein S8 OS=Zea mays


Gene families : OG0000906 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000906_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01006249001
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00155570 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
AMTR_s00109p00031400 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 OrthoFinder output from all 47 species
AT5G20290 No alias Ribosomal protein S8e family protein 0.1 OrthoFinder output from all 47 species
Adi_g113421 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g00910 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ala_g04001 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ala_g38098 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Als_g62935 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aob_g07667 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aop_g11567 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Aop_g32909 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Aspi01Gene33947.t1 Aspi01Gene33947 component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cba_g66206 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g69923 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.01G124400.1 Ceric.01G124400 component *(eS8) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020610.79 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Cre06.g272800 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 OrthoFinder output from all 47 species
Dac_g03069 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Dac_g26233 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g29644 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
GSVIVT01037763001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 OrthoFinder output from all 47 species
Gb_28325 No alias component RPS8 of SSU proteome 0.07 OrthoFinder output from all 47 species
LOC_Os02g28810.1 LOC_Os02g28810 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica... 0.08 OrthoFinder output from all 47 species
LOC_Os04g28180.1 LOC_Os04g28180 component RPS8 of SSU proteome 0.06 OrthoFinder output from all 47 species
MA_14571g0010 No alias component RPS8 of SSU proteome 0.09 OrthoFinder output from all 47 species
MA_9738483g0010 No alias component RPS8 of SSU proteome 0.07 OrthoFinder output from all 47 species
Mp2g16300.1 No alias component RPS8 of SSU proteome 0.08 OrthoFinder output from all 47 species
Msp_g01868 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Msp_g18199 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g01823 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ore_g02405 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Pir_g02421 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Pp3c13_20020V3.1 Pp3c13_20020 Ribosomal protein S8e family protein 0.05 OrthoFinder output from all 47 species
Pp3c19_6490V3.1 Pp3c19_6490 Ribosomal protein S8e family protein 0.06 OrthoFinder output from all 47 species
Pp3c4_11370V3.1 Pp3c4_11370 Ribosomal protein S8e family protein 0.05 OrthoFinder output from all 47 species
Ppi_g27614 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008597 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0161.g023905 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Sam_g06814 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sam_g15855 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Sam_g19629 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g27314 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Solyc06g007570.3.1 Solyc06g007570 component RPS8 of SSU proteome 0.07 OrthoFinder output from all 47 species
Solyc06g083180.4.1 Solyc06g083180 component RPS8 of SSU proteome 0.11 OrthoFinder output from all 47 species
Solyc07g065170.3.1 Solyc07g065170 component RPS8 of SSU proteome 0.04 OrthoFinder output from all 47 species
Solyc09g057650.3.1 Solyc09g057650 component RPS8 of SSU proteome 0.05 OrthoFinder output from all 47 species
Solyc10g006070.3.1 Solyc10g006070 component RPS8 of SSU proteome 0.04 OrthoFinder output from all 47 species
Spa_g11102 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Spa_g21054 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g25236 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Spa_g44564 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Spa_g53727 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Spa_g53728 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g03723 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Tin_g09569 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Tin_g45585 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e004092_P002 Zm00001e004092 component RPS8 of SSU proteome 0.04 OrthoFinder output from all 47 species
Zm00001e024995_P001 Zm00001e024995 component RPS8 of SSU proteome 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR022309 Ribosomal_S8e/biogenesis_NSA2 40 68
No external refs found!